Transcript: lnc-NOS2-1:1

Basic information

LNCipedia transcript ID: lnc-NOS2-1:1 
LNCipedia gene ID: lnc-NOS2-1
Location (hg38): chr17:27661549-27663658
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2110 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000583179.1; RP11-19P22.5-001; OTTHUMT00000445273.1; NONHSAT052337
Alternative gene names: ENSG00000265788.1; RP11-19P22.5; OTTHUMG00000179198.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 82.4683 coding 
CPAT coding probability 8.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-NOS2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NOS2-1:1
4.0 lnc-NOS2-1:1
4.1 lnc-NOS2-1:1
5.0 lnc-NOS2-1:1
5.1 lnc-SLC6A4-124:4
5.2 lnc-NOS2-1:1