Transcript: lnc-NLRP12-3:1

Basic information

LNCipedia transcript ID: lnc-NLRP12-3:1 
LNCipedia gene ID: lnc-NLRP12-3
Ensembl Gene ID: ENSG00000269877
Ensembl Transcript ID: ENST00000595160
Location (hg38): chr19:53787597-53788169
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 446 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT067832; ENST00000595160.1
Alternative gene names: ENSG00000269877.1; MIR371B; CTD-3022G6.1; ENSG00000269877.2; ENSG00000269877.3; AC008753.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -85.1094 non-coding 
CPAT coding probability 4.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NLRP12-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NLRP12-3:1
4.0 lnc-NLRP12-3:1
4.1 lnc-NLRP12-3:1
5.0 lnc-NLRP12-3:1
5.1 lnc-TMC4-30:1
5.2 lnc-NLRP12-3:1