Transcript: lnc-NKX2-5-6:1

Basic information

LNCipedia transcript ID: lnc-NKX2-5-6:1 
LNCipedia gene ID: lnc-NKX2-5-6
Location (hg38): chr5:173318178-173324286
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 566 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT105176
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -136.219 non-coding 
CPAT coding probability 94.64% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-NKX2-5-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NKX2-5-6:1
4.0 lnc-NKX2-5-6:1
4.1 lnc-NKX2-5-6:1
5.0 lnc-NKX2-5-6:1
5.1 lnc-PDLIM7-66:1
5.2 lnc-NKX2-5-6:1