Transcript: lnc-NKD1-1:1

Basic information

LNCipedia transcript ID: lnc-NKD1-1:1 
LNCipedia gene ID: lnc-NKD1-1
Location (hg38): chr16:50645809-50649249
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3441 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000563424.2; RP11-401P9.4-001; OTTHUMT00000422981.2; NONHSAT142422
Alternative gene names: ENSG00000261685.2; RP11-401P9.4; OTTHUMG00000173400.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.9469 non-coding 
CPAT coding probability 11.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NKD1-1:1 yes no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res
  2. Zhang (2015), Long non-coding RNA expression profiles of hepatitis C virus-related dysplasia and hepatocellular carcinoma., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NKD1-1:1
4.0 lnc-NKD1-1:1
4.1 lnc-NKD1-1:1
5.0 lnc-NKD1-1:1
5.1 lnc-ADGRG1-136:1
5.2 lnc-NKD1-1:1