Transcript: lnc-NKAP-4:7

Basic information

LNCipedia transcript ID: lnc-NKAP-4:7 
LNCipedia gene ID: lnc-NKAP-4
Location (hg38): chrX:120010718-120015544
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 772 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00017086; ENST00000454625; ENST00000454625.1; GS1-421I3.2-001; OTTHUMT00000058082.1; NONHSAT138358
Alternative gene names: XLOC_008221; linc-NKAP; ENSG00000234493; GS1-421I3.2; ENSG00000234493.1; OTTHUMG00000022289.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -34.1693 non-coding 
CPAT coding probability 49.57% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-NKAP-4:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RHOXF2B-1:1
3.1 lnc-RHOXF2B-1:1
4.0 lnc-RHOXF2B-1:1
4.1 lnc-NKAP-4:7
5.0 lnc-NKAP-4:7
5.1 lnc-CT47A8-12:7
5.2 lnc-NKAP-4:7