Transcript: lnc-NKAIN3-14:28

Basic information

LNCipedia transcript ID: lnc-NKAIN3-14:28 
LNCipedia gene ID: lnc-NKAIN3-14
Ensembl Gene ID: ENSG00000254119
Ensembl Transcript ID: ENST00000523728
Location (hg38): chr8:61852653-61885559
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 398 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000523728; ENST00000523728.1; RP11-705O24.1-002; OTTHUMT00000378343.1; NONHSAT126899
Alternative gene names: ENSG00000254119; RP11-705O24.1; ENSG00000254119.1; OTTHUMG00000164339.2; ENSG00000254119.5; AC025524.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.9959 non-coding 
CPAT coding probability 0.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NKAIN3-14:28 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CLVS1-3:13
3.1 lnc-CLVS1-3:13
4.0 lnc-CLVS1-3:13
4.1 lnc-NKAIN3-14:28
5.0 lnc-NKAIN3-14:28
5.1 lnc-SDCBP-62:28
5.2 lnc-NKAIN3-14:28