Transcript: lnc-NEDD1-5:1

Basic information

LNCipedia transcript ID: lnc-NEDD1-5:1 
LNCipedia gene ID: lnc-NEDD1-5
Location (hg38): chr12:97715120-97716959
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 449 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00020536; NONHSAT030108
Alternative gene names: XLOC_009850; linc-TMPO-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -219.8029 non-coding 
CPAT coding probability 1.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NEDD1-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NEDD1-4:1
3.1 lnc-NEDD1-5:1
4.0 lnc-NEDD1-5:1
4.1 lnc-NEDD1-5:1
5.0 lnc-NEDD1-5:1
5.1 lnc-NEDD1-5:1
5.2 lnc-NEDD1-5:1