Transcript: lnc-NECAP2-1:4

Basic information

LNCipedia transcript ID: lnc-NECAP2-1:4 
LNCipedia gene ID: lnc-NECAP2-1
Location (hg38): chr1:16520886-16521769
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 444 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00000848; NONHSAT001134
Alternative gene names: XLOC_000063; linc-CROCC-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.1727 non-coding 
CPAT coding probability 1.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NECAP2-1:4 no no no no

Available literature

  1. Gao (2014), Differential expression of long noncoding RNA in primary and recurrent nasopharyngeal carcinoma., Biomed Res Int
  2. Gao (2014), Long non-coding RNA deregulation in tongue squamous cell carcinoma., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AL355149.1-1:2
3.1 lnc-AL355149.1-1:2
4.0 lnc-AL355149.1-1:2
4.1 lnc-AL355149.1-1:2
5.0 lnc-AL355149.1-1:2
5.1 lnc-SZRD1-8:3
5.2 lnc-NECAP2-1:4