Transcript: lnc-NDFIP2-8:1

Basic information

LNCipedia transcript ID: lnc-NDFIP2-8:1 
LNCipedia gene ID: lnc-NDFIP2-8
Location (hg38): chr13:80356318-80363599
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1362 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00021859; NONHSAT034509
Alternative gene names: XLOC_010453; linc-SLITRK5-10


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 37.1474 non-coding 
CPAT coding probability 1.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NDFIP2-8:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NDFIP2-8:1
3.1 lnc-NDFIP2-8:1
4.0 lnc-NDFIP2-8:1
4.1 lnc-NDFIP2-8:1
5.0 lnc-NDFIP2-8:1
5.1 lnc-COL4A2-195:1
5.2 lnc-NDFIP2-8:1