Transcript: lnc-NDFIP2-7:8

Basic information

LNCipedia transcript ID: lnc-NDFIP2-7:8 
HGNC Gene Symbol: lnc-NDFIP2-7    
HGNC Full Gene Name: long intergenic non-protein coding RNA 382
Ensembl Gene ID: ENSG00000229175
Ensembl Transcript ID: ENST00000427918
Location (hg38): chr13:79872586-79917944
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 890 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000427918; ENST00000427918.1; RP11-501G7.1-001; OTTHUMT00000045385.1
Alternative gene names: ENSG00000229175; RP11-501G7.1; ENSG00000229175.1; OTTHUMG00000017139.1; LINC00382


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -146.5371 non-coding 
CPAT coding probability 2.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NDFIP2-7:8 no no no no

Available literature

  1. Luo (2015), Lack of association of a genetic variant in the long intergenic noncoding RNA (linc01080) with Alzheimer's disease and amnestic mild cognitive impairment in Han Chinese., Int. J. Neurosci.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NDFIP2-6:2
3.1 lnc-NDFIP2-6:2
4.0 lnc-NDFIP2-7:8
4.1 lnc-NDFIP2-7:8
5.0 lnc-NDFIP2-7:8
5.1 lnc-COL4A2-200:3
5.2 lnc-NDFIP2-7:8