Transcript: lnc-NDFIP2-7:2

Basic information

LNCipedia transcript ID: lnc-NDFIP2-7:2 
LNCipedia gene ID: lnc-NDFIP2-7
Location (hg38): chr13:80131478-80159336
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 662 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00021857; NONHSAT034507
Alternative gene names: XLOC_010451; linc-SLITRK5-11


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -87.0357 non-coding 
CPAT coding probability 0.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NDFIP2-7:2 no no no no

Available literature

  1. Luo (2015), Lack of association of a genetic variant in the long intergenic noncoding RNA (linc01080) with Alzheimer's disease and amnestic mild cognitive impairment in Han Chinese., Int. J. Neurosci.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NDFIP2-7:2
3.1 lnc-NDFIP2-7:2
4.0 lnc-NDFIP2-7:2
4.1 lnc-NDFIP2-7:2
5.0 lnc-NDFIP2-7:2
5.1 lnc-COL4A2-200:15
5.2 lnc-NDFIP2-7:2