Transcript: lnc-NDFIP2-7:14

Basic information

LNCipedia transcript ID: lnc-NDFIP2-7:14 
LNCipedia gene ID: lnc-NDFIP2-7
Location (hg38): chr13:80131474-80133968
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1298 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000015453.1|MICT00000096738.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -16.3209 non-coding 
CPAT coding probability 0.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NDFIP2-7:14 no no no no

Available literature

  1. Luo (2015), Lack of association of a genetic variant in the long intergenic noncoding RNA (linc01080) with Alzheimer's disease and amnestic mild cognitive impairment in Han Chinese., Int. J. Neurosci.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-NDFIP2-7:14
5.0 lnc-NDFIP2-7:14
5.1 lnc-COL4A2-200:13
5.2 lnc-NDFIP2-7:14