Transcript: lnc-NDFIP2-3:1

Basic information

LNCipedia transcript ID: lnc-NDFIP2-3:1 
LNCipedia gene ID: lnc-NDFIP2-3
Location (hg38): chr13:79637468-79666741
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 305 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00021853; NONHSAT034494
Alternative gene names: XLOC_010447; linc-SLITRK5-15


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -421.4991 non-coding 
CPAT coding probability 0.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NDFIP2-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NDFIP2-3:1
3.1 lnc-NDFIP2-3:1
4.0 lnc-NDFIP2-3:1
4.1 lnc-NDFIP2-3:1
5.0 lnc-NDFIP2-3:1
5.1 lnc-COL4A2-202:1
5.2 lnc-NDFIP2-3:1