Transcript: lnc-NCOA3-5:2

Basic information

LNCipedia transcript ID: lnc-NCOA3-5:2 
LNCipedia gene ID: lnc-NCOA3-5
Location (hg38): chr20:47894379-47896886
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2018 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00028190; NONHSAT080100
Alternative gene names: XLOC_013543; linc-ARFGEF2-12


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 19.371 non-coding 
CPAT coding probability 0.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NCOA3-5:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NCOA3-4:2
3.1 lnc-NCOA3-5:2
4.0 lnc-NCOA3-5:2
4.1 lnc-NCOA3-5:2
5.0 lnc-NCOA3-5:2
5.1 lnc-SNAI1-56:2
5.2 lnc-NCOA3-5:2