Transcript: lnc-NCOA3-10:1

Basic information

LNCipedia transcript ID: lnc-NCOA3-10:1 
LNCipedia gene ID: lnc-NCOA3-10
Location (hg38): chr20:48120400-48121549
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 704 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00028197
Alternative gene names: XLOC_013548; linc-ARFGEF2-7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.566 non-coding 
CPAT coding probability 1.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NCOA3-10:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NCOA3-9:1
3.1 lnc-NCOA3-10:1
4.0 lnc-NCOA3-10:1
4.1 lnc-NCOA3-10:1
5.0 lnc-NCOA3-10:1
5.1 lnc-SNAI1-50:7
5.2 lnc-NCOA3-10:1