Transcript: lnc-NBPF6-1:6

Basic information

LNCipedia transcript ID: lnc-NBPF6-1:6 
LNCipedia gene ID: lnc-NBPF6-1
Ensembl Gene ID: ENSG00000224698
Ensembl Transcript ID: ENST00000419814
Location (hg38): chr1:108420689-108433184
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2481 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000419814; ENST00000419814.1; RP11-131J3.1-001; OTTHUMT00000096101.1; NONHSAT004986
Alternative gene names: ENSG00000224698; RP11-131J3.1; ENSG00000224698.1; OTTHUMG00000039829.1; AL390038.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.8973 non-coding 
CPAT coding probability 34.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NBPF6-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM102B-1:1
3.1 lnc-FAM102B-1:1
4.0 lnc-FAM102B-1:1
4.1 lnc-FAM102B-1:1
5.0 lnc-FAM102B-1:1
5.1 lnc-GSTM5-34:1
5.2 lnc-NBPF6-1:6