Transcript: lnc-NBPF11-1:8

Basic information

LNCipedia transcript ID: lnc-NBPF11-1:8 
LNCipedia gene ID: lnc-NBPF11-1
Location (hg38): chr1:148208304-148228658
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 750 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT005983; ENST00000596181.1
Alternative gene names: ENSG00000227733.4; RP4-565E6.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.4029 non-coding 
CPAT coding probability 5.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NBPF11-1:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NBPF11-1:8
4.0 lnc-NBPF11-1:8
4.1 lnc-NBPF11-1:8
5.0 lnc-NBPF11-1:8
5.1 lnc-PPIAL4G-29:18
5.2 lnc-NBPF11-1:8