Transcript: lnc-NBPF11-1:3

Basic information

LNCipedia transcript ID: lnc-NBPF11-1:3 
LNCipedia gene ID: lnc-NBPF11-1
Location (hg38): chr1:148208238-148226621
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 739 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000464343.1; RP4-565E6.1-005; OTTHUMT00000351197.1; NONHSAT005982
Alternative gene names: ENSG00000227733.2; RP4-565E6.1; OTTHUMG00000013881.2; ENSG00000227733.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.4029 non-coding 
CPAT coding probability 2.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NBPF11-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NBPF11-1:3
4.0 lnc-NBPF11-1:3
4.1 lnc-NBPF11-1:3
5.0 lnc-NBPF11-1:3
5.1 lnc-PPIAL4G-29:28
5.2 lnc-NBPF11-1:3