Transcript: lnc-NBPF11-1:13

Basic information

LNCipedia transcript ID: lnc-NBPF11-1:13 
LNCipedia gene ID: lnc-NBPF11-1
Ensembl Gene ID: ENSG00000227733
Ensembl Transcript ID: ENST00000596220
Location (hg38): chr1:148207843-148217078
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 573 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT005980; ENST00000596220.1
Alternative gene names: ENSG00000227733.4; RP4-565E6.1; ENSG00000227733.9; AC239809.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -54.3519 non-coding 
CPAT coding probability 4.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NBPF11-1:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NBPF11-1:13
4.0 lnc-NBPF11-1:13
4.1 lnc-NBPF11-1:13
5.0 lnc-NBPF11-1:13
5.1 lnc-PPIAL4G-29:33
5.2 lnc-NBPF11-1:13