Transcript: lnc-NBPF1-9:1

Basic information

LNCipedia transcript ID: lnc-NBPF1-9:1 
LNCipedia gene ID: lnc-NBPF1-9
Ensembl Gene ID: ENSG00000282740
Ensembl Transcript ID: ENST00000633433
Location (hg38): chr1:16739938-16750589
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 819 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000633433.1
Alternative gene names: ENSG00000282740.1; RP5-1182A14.7; AL021920.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 108.8342 coding 
CPAT coding probability 41.90% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-NBPF1-9:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-MST1P9-6:1
4.1 lnc-MST1P9-6:1
5.0 lnc-MST1P9-6:1
5.1 lnc-LRRC38-50:1
5.2 lnc-NBPF1-9:1