Transcript: lnc-NBPF1-3:1

Basic information

LNCipedia transcript ID: lnc-NBPF1-3:1 
LNCipedia gene ID: lnc-NBPF1-3
Location (hg38): chr1:16647399-16649402
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1913 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000535991; NONHSAT001181
Alternative gene names: ENSG00000256048; AL137798.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 82.9833 coding 
CPAT coding probability 5.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-NBPF1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MST1P9-1:1
3.1 lnc-MST1P9-1:1
4.0 lnc-MST1P9-1:1
4.1 lnc-MST1P9-1:1
5.0 lnc-MST1P9-1:1
5.1 lnc-LRRC38-46:1
5.2 lnc-NBPF1-3:1