Transcript: lnc-NBPF1-2:9

Basic information

LNCipedia transcript ID: lnc-NBPF1-2:9 
LNCipedia gene ID: lnc-NBPF1-2
Location (hg38): chr1:16593562-16608650
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 488 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000420513; ENST00000420513.1; NBPF1-004; OTTHUMT00000092465.1; NONHSAT001144
Alternative gene names: ENSG00000219481; NBPF1; ENSG00000219481.3; OTTHUMG00000002487.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -31.5245 non-coding 
CPAT coding probability 15.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NBPF1-2:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SPATA21-2:3
3.1 lnc-SPATA21-2:3
4.0 lnc-SPATA21-2:3
4.1 lnc-SPATA21-2:3
5.0 lnc-SPATA21-2:3
5.1 lnc-LRRC38-44:9
5.2 lnc-NBPF1-2:9