Transcript: lnc-NBPF1-1:6

Basic information

LNCipedia transcript ID: lnc-NBPF1-1:6 
LNCipedia gene ID: lnc-NBPF1-1
Location (hg38): chr1:16620845-16644672
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5934 bp
Exons: 11
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000421700; ENST00000421700.1; CROCCP2-001; OTTHUMT00000092472.2; NONHSAT001162
Alternative gene names: ENSG00000215908; CROCCP2; ENSG00000215908.4; OTTHUMG00000037884.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 755.5392 coding 
CPAT coding probability 83.24% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-NBPF1-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MST1P9-2:2
3.1 lnc-MST1P9-2:2
4.0 lnc-MST1P9-2:2
4.1 lnc-MST1P9-2:2
5.0 lnc-MST1P9-2:2
5.1 lnc-LRRC38-45:6
5.2 lnc-NBPF1-1:6