Transcript: lnc-NBPF1-1:4

Basic information

LNCipedia transcript ID: lnc-NBPF1-1:4 
LNCipedia gene ID: lnc-NBPF1-1
Location (hg38): chr1:16629670-16644683
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2029 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000362058; ENST00000362058.2; CROCCP2-002; OTTHUMT00000092783.1
Alternative gene names: ENSG00000215908; CROCCP2; ENSG00000215908.4; OTTHUMG00000037884.2; ENSG00000215908.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score 289.4493 coding 
CPAT coding probability 86.02% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-NBPF1-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MST1P9-2:1
3.1 lnc-MST1P9-2:1
4.0 lnc-MST1P9-2:1
4.1 lnc-MST1P9-2:1
5.0 lnc-MST1P9-2:1
5.1 lnc-LRRC38-45:4
5.2 lnc-NBPF1-1:4