Transcript: lnc-NBPF1-1:10

Basic information

LNCipedia transcript ID: lnc-NBPF1-1:10 
LNCipedia gene ID: lnc-NBPF1-1
Location (hg38): chr1:16618262-16634559
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2763 bp
Exons: 8
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000412962; ENST00000412962.1; CROCCP2-003; OTTHUMT00000092784.1; NONHSAT001159
Alternative gene names: ENSG00000215908; CROCCP2; ENSG00000215908.4; OTTHUMG00000037884.2; ENSG00000215908.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 755.5392 coding 
CPAT coding probability 98.56% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-NBPF1-1:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MST1P9-2:3
3.1 lnc-MST1P9-2:3
4.0 lnc-MST1P9-2:3
4.1 lnc-MST1P9-2:3
5.0 lnc-MST1P9-2:3
5.1 lnc-LRRC38-45:10
5.2 lnc-NBPF1-1:10