Transcript: lnc-NACC1-1:1

Basic information

LNCipedia transcript ID: lnc-NACC1-1:1 
LNCipedia gene ID: lnc-NACC1-1
Location (hg38): chr19:13116880-13118157
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 220 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00027488; NONHSAT061332
Alternative gene names: XLOC_012975; linc-NACC1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -96.7044 non-coding 
CPAT coding probability 0.24% non-coding 
Bazzini small ORFs 1 coding 
orfFrame6.399310626
seqAAMRKLWLRKGAETKVRKGRATCPRSRD
covF1Prop0.166666667

In stringent set: no

Locus conservation

Locus conservation?
lnc-NACC1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NACC1-1:1
3.1 lnc-NACC1-1:1
4.0 lnc-NACC1-1:1
4.1 lnc-NACC1-1:1
5.0 lnc-NACC1-1:1
5.1 lnc-ZNF763-32:2
5.2 lnc-NACC1-1:1