Transcript: lnc-MYNN-1:1

Basic information

LNCipedia transcript ID: lnc-MYNN-1:1 
LNCipedia gene ID: lnc-MYNN-1
Ensembl Gene ID: ENSG00000241479
Ensembl Transcript ID: ENST00000480669
RefSeq ID: NR_134932
Location (hg38): chr3:169447867-169477052
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 535 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000480669.1; RP11-641D5.2-001; OTTHUMT00000351755.1; NONHSAT093147; NR_134932.1
Alternative gene names: ENSG00000241479.1; RP11-641D5.2; OTTHUMG00000158687.1; AC074033.2; LOC105374205; AC074033.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -330.7068 non-coding 
CPAT coding probability 8.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MYNN-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MYNN-1:1
4.0 lnc-MYNN-1:1
4.1 lnc-MYNN-1:1
5.0 lnc-MYNN-1:1
5.1 lnc-LRRIQ4-11:1
5.2 lnc-MYNN-1:1