Transcript: lnc-MYH3-1:1

Basic information

LNCipedia transcript ID: lnc-MYH3-1:1 
LNCipedia gene ID: lnc-MYH3-1
Ensembl Gene ID: ENSG00000261433
Ensembl Transcript ID: ENST00000569543
Location (hg38): chr17:10658542-10659082
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 541 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000569543.1; CTC-297N7.1-001; OTTHUMT00000431325.1; NONHSAT145628
Alternative gene names: ENSG00000261433.1; CTC-297N7.1; OTTHUMG00000175966.1; AC002347.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -173.051 non-coding 
CPAT coding probability 2.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MYH3-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MYH3-1:1
4.0 lnc-MYH3-1:1
4.1 lnc-MYH3-1:1
5.0 lnc-MYH3-1:1
5.1 lnc-GAS7-5:1
5.2 lnc-MYH3-1:1