Transcript: lnc-MYCN-132:1

Basic information

LNCipedia transcript ID: lnc-MYCN-132:1 
LNCipedia gene ID: lnc-MYCN-132
Location (hg38): chr2:16224047-16229140
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 839 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: TCONS_00002834; ENST00000420404; ENST00000420404.1; AC010745.2-001; OTTHUMT00000323748.1; NONHSAT069329
Alternative gene names: XLOC_001367; linc-VSNL1-6; ENSG00000228876; AC010745.2; ENSG00000228876.1; OTTHUMG00000151750.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -105.5953 non-coding 
CPAT coding probability 2.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MYCN-132:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MYCN-4:1
3.1 lnc-MYCN-4:1
4.0 lnc-MYCN-4:1
4.1 lnc-MYCN-4:1
5.0 lnc-MYCN-4:1
5.1 lnc-SNX17-132:1
5.2 lnc-MYCN-132:1