Transcript: lnc-MUC19-1:2

Basic information

LNCipedia transcript ID: lnc-MUC19-1:2 
LNCipedia gene ID: lnc-MUC19-1
Location (hg38): chr12:40544548-40548626
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 563 bp
Exons: 9
Sources: NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: NONHSAT027737; ENST00000541039.5
Alternative gene names: ENSG00000205592.13; MUC19


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -125.2637 non-coding 
CPAT coding probability 84.46% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-MUC19-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MUC19-1:2
4.0 lnc-MUC19-1:2
4.1 lnc-MUC19-1:2
5.0 lnc-MUC19-1:2
5.1 lnc-IRAK4-36:3
5.2 lnc-MUC19-1:2