Transcript: lnc-MTPAP-2:1

Basic information

LNCipedia transcript ID: lnc-MTPAP-2:1 
LNCipedia gene ID: lnc-MTPAP-2
Location (hg38): chr10:30280086-30280910
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 514 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00017944; ENST00000411802; ENST00000411802.1; RP11-305E6.1-001; OTTHUMT00000047412.1; NONHSAT012562
Alternative gene names: XLOC_008765; linc-KIAA1462; ENSG00000227955; RP11-305E6.1; ENSG00000227955.1; OTTHUMG00000017886.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MTPAP-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MTPAP-1:1
3.1 lnc-MTPAP-2:1
4.0 lnc-MTPAP-2:1
4.1 lnc-MTPAP-2:1
5.0 lnc-MTPAP-2:1
5.1 lnc-MPP7-47:1
5.2 lnc-MTPAP-2:1