Transcript: lnc-MTHFSD-4:1

Basic information

LNCipedia transcript ID: lnc-MTHFSD-4:1 
LNCipedia gene ID: lnc-MTHFSD-4
Ensembl Gene ID: ENSG00000260387
Ensembl Transcript ID: ENST00000566485
Location (hg38): chr16:86636328-86637145
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 269 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000566485.1; RP11-463O9.6-001; OTTHUMT00000432202.1; NONHSAT144229
Alternative gene names: ENSG00000260387.1; RP11-463O9.6; OTTHUMG00000176482.1; AC009108.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 3.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MTHFSD-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MTHFSD-4:1
4.0 lnc-MTHFSD-4:1
4.1 lnc-MTHFSD-4:1
5.0 lnc-MTHFSD-4:1
5.1 lnc-MTHFSD-4:1
5.2 lnc-MTHFSD-4:1