Transcript: lnc-MTHFR-2:1

Basic information

LNCipedia transcript ID: lnc-MTHFR-2:1 
LNCipedia gene ID: lnc-MTHFR-2
Location (hg38): chr1:11822797-11823280
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 432 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000442242.1; RP5-934G17.2-001; OTTHUMT00000006811.1; NONHSAT000918
Alternative gene names: ENSG00000236997.1; RP5-934G17.2; OTTHUMG00000002376.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -48.1609 non-coding 
CPAT coding probability 8.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MTHFR-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MTHFR-2:1
4.0 lnc-MTHFR-2:1
4.1 lnc-MTHFR-2:1
5.0 lnc-MTHFR-2:1
5.1 lnc-NPPB-2:1
5.2 lnc-MTHFR-2:1