Transcript: lnc-MTCH1-2:1

Basic information

LNCipedia transcript ID: lnc-MTCH1-2:1 
LNCipedia gene ID: lnc-MTCH1-2
Ensembl Gene ID: ENSG00000232598
Ensembl Transcript ID: ENST00000427609
Location (hg38): chr6:36940071-36944675
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 497 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT112241; ENST00000427609.2
Alternative gene names: ENSG00000232598.2; RP1-90K10.4; AL122034.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -82.6146 non-coding 
CPAT coding probability 1.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MTCH1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MTCH1-2:1
4.0 lnc-MTCH1-2:1
4.1 lnc-MTCH1-2:1
5.0 lnc-MTCH1-2:1
5.1 lnc-CPNE5-7:1
5.2 lnc-MTCH1-2:1