Transcript: lnc-MT1A-1:3

Basic information

LNCipedia transcript ID: lnc-MT1A-1:3 
LNCipedia gene ID: lnc-MT1A-1
Location (hg38): chr16:56643687-56644940
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 363 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00024226
Alternative gene names: XLOC_011736; linc-MT1B


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 49.0459 non-coding 
CPAT coding probability 27.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-MT1A-1:3 no no no no

Available literature

  1. Yu (2014), Tumor suppressor long non-coding RNA, MT1DP is negatively regulated by YAP and Runx2 to inhibit FoxA1 in liver cancer cells., Cell. Signal.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MT1A-1:3
3.1 lnc-MT1A-1:3
4.0 lnc-MT1A-1:3
4.1 lnc-MT1A-1:3
5.0 lnc-MT1A-1:3
5.1 lnc-ADGRG1-49:3
5.2 lnc-MT1A-1:3