Transcript: lnc-MSH2-1:3

Basic information

LNCipedia transcript ID: lnc-MSH2-1:3 
LNCipedia gene ID: lnc-MSH2-1
Location (hg38): chr2:47757665-47760559
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 913 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT070595; FPKM1_group_16042_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -25.6256 non-coding 
CPAT coding probability 3.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MSH2-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MSH6-1:2
4.0 lnc-MSH6-1:2
4.1 lnc-MSH6-1:2
5.0 lnc-MSH6-1:2
5.1 lnc-TTC7A-12:2
5.2 lnc-MSH2-1:3