Transcript: lnc-MRPL33-1:13

Basic information

LNCipedia transcript ID: lnc-MRPL33-1:13 
LNCipedia gene ID: lnc-MRPL33-1
Location (hg38): chr2:27752858-27757622
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 331 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00003617; NONHSAT069804
Alternative gene names: XLOC_001406; linc-MRPL33


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.2257 non-coding 
CPAT coding probability 0.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MRPL33-1:13 no no no no

Available literature

  1. Hou (2014), Long noncoding RNAs expression patterns associated with chemo response to cisplatin based chemotherapy in lung squamous cell carcinoma patients., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC4A1AP-1:8
3.1 lnc-SLC4A1AP-1:8
4.0 lnc-MRPL33-1:13
4.1 lnc-MRPL33-1:13
5.0 lnc-MRPL33-1:13
5.1 lnc-SNX17-22:12
5.2 lnc-MRPL33-1:13