Transcript: lnc-MRM3-4:1

Basic information

LNCipedia transcript ID: lnc-MRM3-4:1 
LNCipedia gene ID: lnc-MRM3-4
Ensembl Gene ID: ENSG00000262133
Ensembl Transcript ID: ENST00000573877
Location (hg38): chr17:877902-880093
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 585 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000573877.1; RP11-676J12.6-001; OTTHUMT00000437221.1; NONHSAT144771
Alternative gene names: ENSG00000262133.1; RP11-676J12.6; OTTHUMG00000177502.1; AC087392.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -237.5032 non-coding 
CPAT coding probability 12.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MRM3-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RNMTL1-1:1
4.0 lnc-RNMTL1-1:1
4.1 lnc-RNMTL1-1:1
5.0 lnc-RNMTL1-1:1
5.1 lnc-RPA1-48:1
5.2 lnc-MRM3-4:1