Transcript: lnc-MPHOSPH8-16:1

Basic information

LNCipedia transcript ID: lnc-MPHOSPH8-16:1 
LNCipedia gene ID: lnc-MPHOSPH8-16
Location (hg38): chr13:18859827-18860742
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 489 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000418741; ENST00000418741.1; LINC00419-001; OTTHUMT00000043983.1; NONHSAT032220
Alternative gene names: ENSG00000227332; RP11-38M15.11; ENSG00000227332.1; LINC00419; OTTHUMG00000016460.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -72.708 non-coding 
CPAT coding probability 2.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MPHOSPH8-16:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-408E5.4.1-6:1
3.1 lnc-RP11-408E5.4.1-7:1
4.0 lnc-RP11-408E5.4.1-7:1
4.1 lnc-RP11-408E5.4.1-7:1
5.0 lnc-RP11-408E5.4.1-7:1
5.1 lnc-GTF3A-157:1
5.2 lnc-MPHOSPH8-16:1