Transcript: lnc-MPHOSPH6-2:3

Basic information

LNCipedia transcript ID: lnc-MPHOSPH6-2:3 
LNCipedia gene ID: lnc-MPHOSPH6-2
Ensembl Gene ID: ENSG00000261176
Ensembl Transcript ID: ENST00000565374
Location (hg38): chr16:82554049-82575210
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 504 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000565374.1; RP11-2L4.1-001; OTTHUMT00000432579.1
Alternative gene names: ENSG00000261176.1; RP11-2L4.1; OTTHUMG00000176580.1; AC009117.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -164.0959 non-coding 
CPAT coding probability 2.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MPHOSPH6-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MPHOSPH6-2:3
4.0 lnc-MPHOSPH6-2:3
4.1 lnc-MPHOSPH6-2:3
5.0 lnc-MPHOSPH6-2:3
5.1 lnc-MAF-38:3
5.2 lnc-MPHOSPH6-2:3