Transcript: lnc-MMS22L-1:1

Basic information

LNCipedia transcript ID: lnc-MMS22L-1:1 
LNCipedia gene ID: lnc-MMS22L-1
Ensembl Gene ID: ENSG00000226207
Ensembl Transcript ID: ENST00000432438
Location (hg38): chr6:97710953-97717197
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 499 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011529; ENST00000432438; ENST00000432438.1; RP1-104O17.3-001; OTTHUMT00000041580.1; NONHSAT114089
Alternative gene names: XLOC_005790; linc-MMS22L; ENSG00000226207; RP1-104O17.3; ENSG00000226207.1; OTTHUMG00000015252.1; AL080316.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -174.5706 non-coding 
CPAT coding probability 10.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MMS22L-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MMS22L-1:1
3.1 lnc-MMS22L-1:1
4.0 lnc-MMS22L-1:1
4.1 lnc-MMS22L-1:1
5.0 lnc-MMS22L-1:1
5.1 lnc-GABRR1-40:1
5.2 lnc-MMS22L-1:1