Transcript: lnc-MMP17-1:1

Basic information

LNCipedia transcript ID: lnc-MMP17-1:1 
LNCipedia gene ID: lnc-MMP17-1
Location (hg38): chr12:131857420-131864051
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 283 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000542763; ENST00000542763.1; RP11-417L19.2-001; OTTHUMT00000397768.1; NONHSAT032043
Alternative gene names: ENSG00000256955; RP11-417L19.2; ENSG00000256955.1; OTTHUMG00000168051.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 19.0038 non-coding 
CPAT coding probability 2.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MMP17-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MMP17-1:1
3.1 lnc-MMP17-1:1
4.0 lnc-MMP17-1:1
4.1 lnc-MMP17-1:1
5.0 lnc-MMP17-1:1
5.1 lnc-ULK1-3:1
5.2 lnc-MMP17-1:1