Transcript: lnc-MLH3-1:1

Basic information

LNCipedia transcript ID: lnc-MLH3-1:1 
LNCipedia gene ID: lnc-MLH3-1
Ensembl Gene ID: ENSG00000258646
Ensembl Transcript ID: ENST00000554430
Location (hg38): chr14:75004719-75008481
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 489 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000554430.1; RP11-950C14.3-001; OTTHUMT00000415000.1; NONHSAT037833
Alternative gene names: ENSG00000258646.1; RP11-950C14.3; OTTHUMG00000171765.1; AL049780.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 320.7048 coding 
CPAT coding probability 11.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-MLH3-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MLH3-1:1
4.0 lnc-MLH3-1:1
4.1 lnc-MLH3-1:1
5.0 lnc-MLH3-1:1
5.1 lnc-PROX2-3:1
5.2 lnc-MLH3-1:1