Transcript: lnc-MLANA-1:1

Basic information

LNCipedia transcript ID: lnc-MLANA-1:1 
LNCipedia gene ID: lnc-MLANA-1
Ensembl Gene ID: ENSG00000228739
Ensembl Transcript ID: ENST00000437881
Location (hg38): chr9:6047360-6066714
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 499 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015646; ENST00000437881; ENST00000437881.1; RP11-218I7.2-001; OTTHUMT00000051653.1; NONHSAT130123
Alternative gene names: XLOC_007273; linc-IL33; ENSG00000228739; RP11-218I7.2; ENSG00000228739.1; OTTHUMG00000019514.1; AL162384.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -47.3668 non-coding 
CPAT coding probability 0.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MLANA-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MLANA-1:1
3.1 lnc-MLANA-1:1
4.0 lnc-MLANA-1:1
4.1 lnc-MLANA-1:1
5.0 lnc-MLANA-1:1
5.1 lnc-RECK-245:2
5.2 lnc-MLANA-1:1