Transcript: lnc-METAP1-11:1

Basic information

LNCipedia transcript ID: lnc-METAP1-11:1 
LNCipedia gene ID: lnc-METAP1-11
Ensembl Gene ID: ENSG00000246090
Ensembl Transcript ID: ENST00000506160
Location (hg38): chr4:99161784-99281241
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 524 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000506160; ENST00000506160.1; RP11-696N14.1-004; OTTHUMT00000364675.1; NONHSAT097525
Alternative gene names: ENSG00000246090; RP11-696N14.1; ENSG00000246090.2; OTTHUMG00000161232.2; ENSG00000246090.6; AP002026.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.8606 non-coding 
CPAT coding probability 14.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-METAP1-11:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-METAP1-2:3
3.1 lnc-METAP1-3:3
4.0 lnc-METAP1-3:3
4.1 lnc-METAP1-3:3
5.0 lnc-METAP1-3:3
5.1 lnc-C4orf17-49:1
5.2 lnc-METAP1-11:1