Transcript: lnc-MEP1B-2:1

Basic information

LNCipedia transcript ID: lnc-MEP1B-2:1 
LNCipedia gene ID: lnc-MEP1B-2
Ensembl Gene ID: ENSG00000262477
Ensembl Transcript ID: ENST00000573479
Location (hg38): chr18:32412182-32413236
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 857 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000503999; ENST00000573479.1; AC021224.1-201; NONHSAT058863
Alternative gene names: ENSG00000249271; AC021224.1; ENSG00000262477.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.8743 non-coding 
CPAT coding probability 0.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MEP1B-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MEP1B-1:1
3.1 lnc-MEP1B-2:1
4.0 lnc-MEP1B-2:1
4.1 lnc-MEP1B-2:1
5.0 lnc-MEP1B-2:1
5.1 lnc-RIOK3-97:1
5.2 lnc-MEP1B-2:1