Transcript: lnc-MEP1A-2:1

Basic information

LNCipedia transcript ID: lnc-MEP1A-2:1 
LNCipedia gene ID: lnc-MEP1A-2
Ensembl Gene ID: ENSG00000225730
Ensembl Transcript ID: ENST00000451135
Location (hg38): chr6:46903471-46909078
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 781 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000451135.1; RP3-365O12.2-001; OTTHUMT00000040809.1
Alternative gene names: ENSG00000225730.1; RP3-365O12.2; OTTHUMG00000014794.1; AL096772.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -103.3253 non-coding 
CPAT coding probability 10.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MEP1A-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MEP1A-2:1
4.0 lnc-MEP1A-2:1
4.1 lnc-MEP1A-2:1
5.0 lnc-MEP1A-2:1
5.1 lnc-EFHC1-49:1
5.2 lnc-MEP1A-2:1