Transcript: lnc-MEI4-3:3

Basic information

LNCipedia transcript ID: lnc-MEI4-3:3 
LNCipedia gene ID: lnc-MEI4-3
Location (hg38): chr6:76774987-76890223
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 228 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00011863; NONHSAT113646
Alternative gene names: XLOC_005355; linc-IRAK1BP1-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -60.7148 non-coding 
CPAT coding probability 0.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MEI4-3:3 no no no no

Available literature

  1. Wang (2015), Expression profile of long non-coding RNAs in pancreatic cancer and their clinical significance as biomarkers., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MYO6-3:2
3.1 lnc-MYO6-3:2
4.0 lnc-MYO6-3:2
4.1 lnc-MYO6-3:2
5.0 lnc-MYO6-3:2
5.1 lnc-CYB5R4-59:3
5.2 lnc-MEI4-3:3