Transcript: lnc-MEF2C-3:1

Basic information

LNCipedia transcript ID: lnc-MEF2C-3:1 
LNCipedia gene ID: lnc-MEF2C-3
Location (hg38): chr5:88944356-88963954
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 394 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010983; NONHSAT102707
Alternative gene names: XLOC_004919; linc-MEF2C-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -205.1975 non-coding 
CPAT coding probability 3.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MEF2C-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MEF2C-2:1
3.1 lnc-MEF2C-3:1
4.0 lnc-MEF2C-3:1
4.1 lnc-MEF2C-3:1
5.0 lnc-MEF2C-3:1
5.1 lnc-ANKRD34B-160:2
5.2 lnc-MEF2C-3:1