Transcript: lnc-MED10-6:2

Basic information

LNCipedia transcript ID: lnc-MED10-6:2 
LNCipedia gene ID: lnc-MED10-6
RefSeq ID: NR_109915
Location (hg38): chr5:5132085-5140054
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1584 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_109915; NR_109915.1
Alternative gene names: CTD-2297D10.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.8983 non-coding 
CPAT coding probability 10.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MED10-6:2 no no no no

Available literature

  1. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MED10-6:2
4.0 lnc-MED10-6:2
4.1 lnc-MED10-6:2
5.0 lnc-MED10-6:2
5.1 lnc-IRX2-53:9
5.2 lnc-MED10-6:2